miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|39730390|gb|AJ613463.1|AJ613463 GAATTCGGCACGAGGCACAAGCTAATCAAGCTCTCAGCTCCTTCCCAGCTCCACGGTTTCCAGCAAGCAAACCGAAGCAC
TAGATCCTCGATGGCTCGCGTGGCACNTGGTCGCCGTGTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCC
GGGGCGGTGACCTGCGGCGACGTGACGTCCGCCGTCGCGCCGTGCATGTCCTACGCGAGGGGGCAAGCGTCGGCACCCTC
GGGGGCGTGCTGCAGCGGGGTGAGGACCCTGAACGCCAAGGCGTCCACCCCGGCCGACCGGAAGGCGGCGTGCAACTGCC
TCAAGAACCTGGCGGGGTCGGGCATCAGCATGGGTAACGCCGCCAACATCCCCGGCAAATGCGGCGTCTCCGTCTCTTTC
CCCATCAACACCAAAACCAACTGCAACAACCTTCACTAAGTTATCTACCAGCATCATCATCACACCAGGCTAGCTAGCCC
ACTCGGTGTCTACTGTTGCTGCTCTCTGCGTGTGTTCGTTGTTGTTTTCTCCATGTGTTCGACCTCCATCTGTTGCCGTT
AATACAGATCGAGCAGATTACTGATCGAATCATCAATAAAATAATGTGTTGAGCTTAAGTTTTATGACATTCGCTGTTAT
CTATAATGATTATAAACTACTCCATCTGTAAAGAAATATGAGAGTGTTTAGATCACTATTTTGCTTTTATATTTCCTTGC
GGAGGGAGTAGTTTTCTTGCCCCGCATGTTGCTGCTGG




Most similar to sp|Q2QYL3|NLTP3_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q2QYL3|NLTP3_ORYSJ Non-specific lipid-transfer protein 3
           OS=Oryza sativa subsp. japonica GN=LTP110-A PE=2 SV=1
          Length = 121

 Score =  128 bits (321), Expect = 5e-29
 Identities = 56/91 (61%), Positives = 76/91 (83%), Gaps = 2/91 (2%)
 Frame = +2

Query: 170 TCGDVTSAVAPCMSYARGQASAPSGACCSGVRTLNAKASTPADRKAACNCLKNLAGS--G 343
           +CGDVTS++APC+SY  G+ S+PS +CCSGVRTLN KAS+ ADR+ AC+CLKN+A S   
Sbjct: 31  SCGDVTSSIAPCLSYVMGRESSPSSSCCSGVRTLNGKASSSADRRTACSCLKNMASSFRN 90

Query: 344 ISMGNAANIPGKCGVSVSFPINTKTNCNNLH 436
           ++MGNAA+IP KCGVSV+FPI+T  +C+ ++
Sbjct: 91  LNMGNAASIPSKCGVSVAFPISTSVDCSKIN 121